Bayesian pooling for analyzing categorical data from small areas
Section 4. Conclusion
In this study, we
construct hierarchical parametric Bayesian pooling models and their
nonparametric versions using the Ferguson (1973) Dirichlet process prior to
pool the data. The pooling methodologies developed here are useful for
analyzing survey data. We used the grid method to draw the parameters with
nonstandard posterior densities and support that lies in a finite interval.
However, we used the Metropolis-Hastings algorithm to draw the parameters with
support in an infinite interval.
The Dirichlet process is
assumed for the parameter of interest
for
in our models.
We apply the slice sampling algorithm for the specification of Dirichlet
process prior, which is an extension of the widely used stick-breaking prior
proposed by Ishwaran and James (2001). Five parametric models are modeled in a
finite-dimensional parameter space, and three nonparametric versions have an
infinite-dimensional parameter space. The eight hierarchical Bayesian models
are also distinguished according to the type of effects in the model
parameters. For the basic model (2.1), we can construct more effective and
efficient models that allow for a borrowing effect from neighboring areas in
small-area estimations. However, exchangeable priors in a hierarchical Bayesian
model may cause an overshrinkage problem. To compensate for this problem, the
effect of a parameter is divided into two elements, as shown in the basic model
(2.2), called the hierarchical Bayesian global-local pooling model. The model
allows for grouping of similar experiments (area) and the borrowing of
information in each area.
To compare the eight
models using real data, we use the BMD data provided by the NHANES III. BMD is
statistically correlated with the probability of fractures, which are an
important public health problem, especially in elderly women. Therefore, BMD is
an important indicator in diagnoses of osteoporosis, where patients might benefit
from early management to improve their bone strength. For each sample, we
assign an indicator based on three categories (normal, osteopenia,
osteoporosis) before analyzing the data. The resulting hierarchical models with
a pooling prior for BMD data outperformed the other models. To compare the
models’ performances, we calculated the DIC and the LCPO. Here, we found the
best performance in the global
local pooling model. Although the nonparametric
versions of the models have an infinite-dimensional parameter space, they
showed similar values for the two comparison measures to those of the
parametric pooling model with a finite-dimensional parameter space. Therefore,
we should be careful in interpreting the results.
Acknowledgements
This work was supported
by the National Research Foundation of Korea (NRF) grant funded by the Korea
government (MSIT) (2016R1D1A1B03932261). This research was also supported by a
grant from the Simons Foundation (#353953, Balgobin Nandram).
Appendix
A. Computations for parameteric models
Let
be the response
matrix and
be the
proportion parameter matrix for (2.1). In an adaptive pooling model, let
Here, no
pooling and complete pooling are special cases of adaptive pooling, with
parameters
and
The full
conditional posterior density of the parameters for the given data is obtained
in the usual way by combining the likelihood and the priors, as follows:
where
To run a Gibbs sampler,
we draw values as follows:
(a)
Full
conditional for
Draw
(b)
Full
conditional for
Draw
Let
denote the
vector of parameters other than the
component
Then, we obtain
the conditional posterior density of
given
in each stage.
Here, we need to estimate the
components of
parameter
sequentially.
Then, we can calculate the
component value
of
using
Using the
conditional posterior density (3.1), we can draw
using the grid
method, with support
(c)
Full
conditional for
Draw
We can use the grid
method for
in this case as
well. Because the grid method can be used for closed support, we transform
to
The absolute
Jacobian is
Then, the
conditional posterior density of
can be
expressed as follows:
The full conditional
posterior density in the case of restricted pooling is obtained from the
likelihood and the priors, constructed from
and from an
additional prior for
where
For the Gibbs sampler, we
consider the latent variables
from a
Bernoulli distribution with parameter
Here, the joint
posterior density is given as follows:
Then, our Gibbs sampler
is described as follows:
(a)
Full
conditional for
Draw
In other words, given
and the data,
follows a truncated beta distribution with
parameters
and
and the lower bound of
is
(b)
Full
conditional for
Draw
where
(c)
Full
conditional for
Draw
In the case of
we can generate
the value of
from a
Dirichlet distribution with parameters
and
In other cases,
we can interpret that as the uncertainty of the modeling. That is, for
given
draws its value
from a uniform Dirichlet distribution with a
parameter
vector, where each component has the value one.
(d)
Full
conditional for
Draw
(e)
Full
conditional for
Draw
Of course, the generating process for parameters
and
is similar to that of the parameter in
adaptive pooling. In addition, the data used for
and
are
Otherwise, the parameter
vector corresponding to area
in global-local
pooling consists of
and
Then, the full
conditional posterior density for the given data in the model is as follows:
where
and
Then, the Gibbs sampler
is as follows:
(a)
Full
conditional for
Draw
(b)
Full
conditional for
Draw
with
(c)
Full
conditional for
Draw
(d)
Full
conditional for
Draw
(e)
Full
conditional for
Draw
(f)
Full
conditional for
Draw
In this model, we suggest
using the Metropolis-Hastings algorithm, which is the most commonly used Markov
Chain Monte Carlo (MCMC) algorithm used to estimate the value of the location
parameter,
Of course,
is drawn from
the above full conditionals, and the Gibbs sampler is performed using the grid
method.
B. Computations for nonparameteric models
In order to pool the
parameters in nonparametric Bayesian models, we apply the slice sampling mehtod
introduced by the Kalli, Griffin and Walker (2011). They proposed an efficient
version of the slice sampler for Dirichlet process mixture models constructed
by Walker (2007). Suppose that the observations
are generated
in the Dirichlet process mixture model with parameter
That is,
Here, we write
to denote that
follows a Dirichlet process with parameter
Then
has a stick-breaking representation
(Sethuraman, 1994) given by
where
are independent and identically distributed (iid)
form
and
with the
being iid from
see also Antoniak (1974).
The Slice sampler
algorithm proposed by Walker (2007) introduces a latent variable
to perform
sampling on the joint distribution. First, the latent variable
has a joint
density as follow
Later, they introduced a latent variable
representing the group assignment of the
observation
At this time, the joint density of
is as follow
Then we need to sample the parameter
and
including latent variables
and
at each iteration of a Gibbs sampler. Kalli et al.
(2011) introduces how to perform slice sampling for Dirichlet process mixture
models by processing
and
as blocks in the basic algorithm described by
Walker (2007). The algorithm is as follow.
-
-
where
and
-
where
and
is a constant,
-
-
For this paper, we need
to sample the following variables at each iteration of a Gibbs sampler:
In general,
is equal to 0.5. However, we use
as a tuning parameter for the hierarchical
Bayesian model. Then, the full posterior density for the nonparametric adaptive
pooling of he given data is given as follows:
where
and the hyperparameters are mutually
independent. Then, our Gibbs sampler can be performed in two steps.
The first step is the
pooling of the data:
(a)
Draw
for
from
(b)
Draw
for
from
Next, we can generate the value of each parameter from the
following conditional density:
(c)
Draw
from
(d)
Draw
from
(e)
Draw
from
(f)
Draw
from
For our Gibbs sampler, we
need to transform
to
because we need
to use the grid method for
which is taken from the noninformative prior with variable
support equal to
(g)
Draw
from
The parameter
is also taken
from the noninformative prior with variable support equal to
as in the case
of
Therefore, we
need to transform
to
with Jacobian
Then, the
conditional density for
is given as
follows:
The nonparametric version
for the restricted pooling has
and
for
Then, we
compose the full posterior density for the given data using equation, as
follows:
In our Gibbs sampler, we
consider the latent variables
for
as the
parametric version for restricted pooling, where the subscripts for the
parameter are equal to the parameter
At this time,
the pooling step for the data is the same as above, and generating the
parameter is as follows:
(a)
Draw
from truncated
(b)
Draw
from
where
(c)
Draw
from
(d)
Draw
from
(e)
Draw
from
(f)
Draw
from
(g)
Draw
from
Lastly, the full
posterior density is calculated using the joint posterior density and the
priors for their parameters in the nonparametric Bayesian global-local pooling
model. Here, the data pooling algorithm is the same as above inference. Then,
we estimate each parameter as follows:
(a)
Draw
from truncated
(b)
Draw
from
where
(c)
Draw
from
(d)
Draw
for
(e)
Draw
from
(f)
Draw
from
(g)
Draw
from
(h)
Draw
from
(i)
Draw
from
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